I ran a seed-based connectivity analysis using DPARSF and REST. While all images look fine in FunImgNormalizedSmoothedDetrendedFiltered, after removing the covariates, they look strangely distorted (and are not in the usual shape of the whole-brain template anymore; I attached one of the files) in FunImgNormalizedSmoothedDetrendedFilteredCovremoved. I am not sure if this is a problem as the images in the FC folder are shaped ok again (the whole-brain mask I entered was applied).
Did something go wrong when removing the covariates or should the images in FunImgNormalizedSmoothedDetrendedFilteredCovremoved look that way?
Thanks a lot for your help.
PS. Is there any way to use the newly added atlases in DPARSA also in DPARSF?