Data Processing Assistant for Resting-State fMRI (DPARSF) V2.3

Re: Data Processing Assistant for Resting-State fMRI ...

Dear Chao-Gan and other experts,

currently im doing my doctoral thesis in the context of my medecine studies. Therefore im trying to find out if there are correlations between different resting-state networks and cognitive performance of patients suffering from ALS (amyotrophic lateral sclerosis).  For analysing my data i have been working with dpars - tool over the last 3 months. 

During the working process i used the EPI template of SPM 12 to show the network pictures normalised on this template.Unfortunately, the EPI template is not always fitting to the voxels representing dfferent networks, so that sometimes ventricles of the brain are tagged or regions which cant be tagged because they are not brain area any more:

 

 

Do you have any idea how i can improve those pictures/results, if it is possible to use another template than the one provided by spm12 which is used by dpars?

Or is it possible to create my own template?

I would be really happy about an answer from your side. Thank you very much!

 

Best regards,

Inga Tasche

DPARSF was stuck in some steps

Dear Chao-Gan

I run the DPARSFA V2.3 on a Linux system (matlab version:2012a, system: centOs 6.7). Sometimes when the program reach the realign step or T1 segmentation step, the program would be stuck in the situation like the image I uploaded, without showing any curve like normal situation. Even if I had waited for a long time, it didn't move anymore. So I had to end the process at last. What's worse was that it didn't return any error message, which could allow me to debug. Could you please help me figure what's wrong with the program. 

Re: DPARSF was stuck in some steps

hey, i wanna know whether your problem have solved? i met the same problem, and i checkd the raw data ,there is no problem. but i don't know why DPARSF was stucked in the realign. it didn't move ,and there is no error message in MATLAB.  Except to receive a response, thanks!

DPARSF error!

 Dear experts! How to solve this problems, thanks a lot!

Exception EAccessViolation in module dcm2nii.exe at 0006BD46.

Access violation at address 0007BD46 in module 'dcm2nii.exe'. Read of address 12EB4000. 

Converting Functional Images:sub1 OK

Index exceeds matrix dimensions.



Error in DPARSF_run (line 323)

            delete(DirImg(j).name);



Error in DPARSF>pushbuttonRun_Callback (line 976)

    [Error]=DPARSF_run(handles.Cfg);



Error in gui_mainfcn (line 96)

        feval(varargin{:});



Error in DPARSF (line 43)

    gui_mainfcn(gui_State, varargin{:});



Error while evaluating uicontrol Callback

DPARSF error in motion scrubbing

 Dear experts,

Any help with the following problem would be much appreciated. I am trying to perform motion scrubbing according to Power with interpolation. Scrubbing begins but terminates before all subjects and sessions are completed, giving the following error message:

Reading images from "/data/stress/Resting_State/WD_DPARSF_150915/FunImgARWSDFC/191/CovRegressed_4DVolume.nii" etc.
Error: No such file or directory
There was a problem writing to the header of
  "/data/stress/Resting_State/WD_DPARSF_150915/FunImgARWSDFCB/191/191_4DVolume.nii"
Error using nifti/create (line 26)
Unable to write header for
"/data/stress/Resting_State/WD_DPARSF_150915/FunImgARWSDFCB/191/191_4DVolume.nii".
Naturally, I have checked that the files exist and that I have permission to write files in the directory. The data have been preprocessed successfully up until ARWSDFC, using motion parameters as regressors of no interest.

Best wishes, Gustav

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