troubles while processing DPARSF basic edition, never happened before

Submitted by chlai on Mon, 05/27/2013 - 23:40

Dear REST experts:

Recently I run the DPARSF basic edition and I faced the following wrong messages in my matlab command window

??? Error using ==> spm_slice_vol at 32
spm_slice_vol.c not compiled - see Makefile

Error in ==> spm_slice_timing at 213
slices(:,:,m) = spm_slice_vol(Vin(m),B,Vin(1).dim(1:2),1);

Error in ==> spm_config_slice_timing>slicetiming at 170
spm_slice_timing(P,Seq,refslice,timing)

Error in ==> spm_jobman>run_struct1 at 1474
feval(prog,val);

Forums: 
Resting-state fMRI topics

DPARSF滤波报错

Submitted by 06170323 on Mon, 05/27/2013 - 10:22

严老师，

你好！


    向您反映一个DPARSF滤波报错问题，就是如果同一台电脑开多个MATLAB同时用DPARSF跑数据时，在滤波这一步特别容易报错（报错内容如下），好像只能允许一个DPARSF跑滤波这一步。

  Load mask "".
  Build band pass filtered mask. Wait...
  Band Pass Filter working. Wait...Error using load
Unable to read MAT-file
C:\Users\GPUS\AppData\Local\Temp\BandPass_4175_GPUS\dim1_00000001.mat

File may be corrupt.

Forums: 
Resting-state fMRI topics

请教一下张寒老师有关mica中成分挑选sort components和identify components的使用方法

Submitted by liuchen on Sun, 05/26/2013 - 23:06

我在使用mica的时候，在成分挑选的时候，gui view界面中点击sort components，并且选择空间相关并加载了需要的DMN网络模板，点击ok之后，软件没有任何反应，
问题1：恳请张寒老师指导一下，mica中sort components的使用。
问题2：identify components在使用默认的设置，全部勾选，点击ok，matlaB就会报错，请问identify components的作用以及他的使用方法。
Idendentify components
??? Undefined function or variable 'dim'.

Error in ==> view_gui>ButtIdenComp_Callback at 898
[ICNOs]=nic_removeNoiseComponent(compNum,dim,outPrefix,threshold,zipFilePath,a);

Error in ==> gui_mainfcn at 96
        feval(varargin{:});

Forums: 
Resting-state fMRI topics

rest error

Submitted by kangzq on Fri, 05/24/2013 - 10:44

Warning: Escape sequence 'Z' is not valid. See 'help sprintf' for valid
escape sequences.
> In rest_detrend at 24
  In alff_gui>(parfor body) at 1279
  In parallel_function at 470
  In alff_gui>Detrend at 1269
  In alff_gui>btnComputeAlff_Callback at 309
  In gui_mainfcn at 96

Forums: 
Resting-state fMRI topics

SPM vs. DPARSF: order of steps and how do I remove nuisance covariates before extracting seed time courses (is code accessible)?

Submitted by cpehrs on Thu, 05/23/2013 - 22:01

Dear DPARSF team,

I have analysed my resting state data with two different approaches:

1. using the DPARSF toolbox

2. using in house scripts for Matlab/SPM. 

Interestingly the results are fairly the same expect that the t-values on group level are much higher in DPARSF (FWE .05 k10, tmax= 104,67,
(seed 51, 12, -27)) than for SPM (FWE .05 k10,  tmax=63.08, (seed 51, 12, -27)). 

Forums: 
Resting-state fMRI topics